Changed read_acttrust() to handle special characters in the input files more robustly. It now reads the file content, removes any special characters, and then writes it to a temporary file before processing. This ensures that the function can handle files with special characters without errors.
Changed sri() parameters. Now the function has a min_data parameter, which specifies the minimum proportion of non-missing values required to compute the SRI for each time point. If the proportion of non-missing values is below this threshold, the SRI will be set to NA for that time point. This helps to avoid computing the SRI when there is insufficient data. Note that the first agreement value is always NA because there is no previous day for comparison, hence it is not treated as missing data.
Changed sri() output. Now the function returns a valid_data column, which indicates the proportion of non-missing values in the agreement column for each time point. This provides additional information about the data quality used to compute the SRI.
Changed sri() default parameter values. Now the function has different default values for sleeping_states and awake_states. The new defaults are sleeping_states = c(1, 2) and awake_states = 0. The previous defaults were sleeping_states = 1 and awake_states = c(0, 2), which considered resting states as awake, differing from the way that the index was originally computed.
Changed state_prop() default values. Now the function has a default value of c(1, 2) for state_values, which considers both sleeping and resting states (for Condor Instruments actigraphy data) as the target states for calculating the proportion. The previous default was 1, which only considered the sleeping state.
Changed state_prop() defensive programming. Now the function accepts cases when a specific value in state_values is not present in the data.
Changed charts typefaces, colors and text casing, for better aesthetics and readability.
